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Daniel Udwary
… of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the …
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Igor Grigoriev
Russia PhD in Molecular Biology, Research Institute for Genetics and Selection of Industrial Organisms, Moscow, … Commun . 11(1):5125. Krizsán et al (2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proc Natl …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the … “survival of the fittest” theory — the most expressed genes found across each of the fungal species were … protein-coding hotspots. “Ensuring that the most expressed genes are also the most efficient at making proteins likely …
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Natural Prodcast Episode 8: Eric Schmidt
… see as the overall “theme” of your research? I know you’ve generally worked in various marine organisms. Except during … really need to know how they’re made. You need to bring the genes into the lab, and you need to manipulate them in the … products made by animals, which is highly unusual, as it’s generally considered that it’s the bacteria living in …
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Benjamin Cole
… their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, … can deliver multiple types of payloads, such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering technique CRAGE lands the cover of ACS …
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A Community Resource for Secondary Metabolite Researchers
… secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database … system known as IMG-ABC. That portal contained biosynthetic gene clusters and secondary metabolites information from …
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Fungus Fuels Tree Growth
… studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … changes in plant roots),  M. elongata  doesn’t have as many gene products that directly influence plant phenotype, such … the plant to have leakier cell walls and weaker defenses in general; the fungus decreased the expression of poplar genes …
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Fungal Friends or Foes in Plant Roots
… plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host interactions and identified 84 gene families that were common in fungi that live within …
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How Maize Makes An Antibiotic Cocktail
… buck. The research team reports that transferring just four genes encoding these enzymes to another plant, such as  … They screened panels of hundreds of maize lines for genetic variation in the ability make zealexins, and harnessed gene expression data from these lines to identify genes …
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Ben Bowen
… datasets with high-performance computing and metabolite atlases. Metabolites, 5(3), 431–442. Yang, J., Rubel, O., … Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American Society for Mass … to HAMLET-induced death; c-Myc and glycolysis. Oncogene, 30(48), 4765–4779. Google Scholar. … Education … …
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A Grass Model to Help Improve Giant Miscanthus
… (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … and more complex patterns of inheritance. The additional genes provided by these chromosomes can contribute to novel … polyploidy, and how genomes respond to extra chromosome and gene copies, will help researchers improve  Miscanthus …
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