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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein … The team worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. … gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … specific features or tools. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …
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Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … and analyze the single nuclei and spatial transcriptomics data this work leverages. These experiments focused on two … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Ian Blaby
Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …
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Katherine Louie
… became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of … samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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A Natural Mechanism Can Turbocharge Viral Evolution
… a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …
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