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Exploring Possibilities: 2022 JGI-UC Merced Interns
… In this short video, UC Merced undergraduate and graduate … enough experience to make really good contributions to the project. Also my area of expertise over the past couple … I think that my skills were very complimentary to the project and I learned a lot and gonna take a lot away from …
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A User-Centered Approach to Accessing JGI Data
… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy considerations …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … that will help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  called geNomad identifies and … into Earth’s ecosystems, researchers must examine the interactions that happen between tiny organisms (microbes) …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … 2019, recalled Uri Neri of Tel Aviv University, one of the project co-leads and first author of the study. Members of …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the students …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay … : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further confirmed by … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded … in genomes.” He’s working with Rokhsar on a newer genome project, and enjoys the fact that he can use what they’ve …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … through their diverse genomic capabilities. Summary In a project supported by the JGI Community Science Program, … including resilience to stress, decomposition, and interactions between forests and the atmosphere. The team learned …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that … worthwhile moving forward with density separation and fraction collection. 4. Q: Are there existing narratives, or … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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