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Digging into Microbial Ecosystems Deep Underground
… in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of … Amundson at Colorado State University have many questions about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … by Congress in 1980 for Superfund sites which are hazardous waste areas that require cleanup and long-term … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Accelerating Metagenomics Discoveries with Deep Learning
… workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … of Berkeley Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating Collaborations for User Facilities (FICUS) program for fiscal year 2026, in … what each facility could generate individually. Learn more about the projects below. …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … expect to see, but also low-abundance microorganisms whose signal would have been filtered out as noise using more … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
… Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more about the DOE Computational Science Graduate Fellowship …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub … and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … archaea and bacteria ( PLoS Biol , 2023). These tools have significantly advanced the field by providing robust …
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into the world of …
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Tina Clarke
… (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … to enabling conflict resolution with respect and trust. Ms. Clarke is very enthusiastic to be a part of the Berkeley Lab’s first Conflict … Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June 2017 – present Berkeley National …
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