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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. … abiotic stress tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his … grass that is well suited to experimental manipulation in the laboratory because of its compact genome, diploid …
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A User-Centered Approach to Accessing JGI Data
… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have … little water, full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow … It performs C4 photosynthesis, which is the fastest way for plants to convert carbon dioxide and water into sugars and …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … reference genome sequences of the male and female plants, each representing a single set of chromosomes, are … without extra crosses. The work wraps more than a decade of working with researchers at the U.S. Department of Energy …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … (a third of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely … stumbled upon an interesting observation in Chlamy. Most plants require the nutrient copper for photosynthesis; …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely … kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … the same experiment to a new environment. She is currently working on her thesis to characterize the microbiome … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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