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Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
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Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience
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Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … his postdoctoral work at the Massachusetts Institute of Technology he developed a high throughput approach for … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate …
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Uncovering Novel Genomes from Earth’s Microbiomes
… now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes from Earth’s … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … to create pipelines, tools and other standardized data resources that the global research community can access and use … at the JGI and Berkeley Lab were developing specific programs to handle this scale of data. Part 2: Souped Up …
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From Competition to Cooperation
… symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, and supported by the Office of …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … Sarah Carey, now at the HudsonAlpha Institute for Biotechnology, reported that high quality genome references are … comprise a full third of each moss genome, and are almost four times the size of the next largest chromosome. As the …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… For bacteria, that salty, slightly stinky air is a rich source of the sulfur they need to grow and divide. Similar to … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … with understanding enabled by Basic Energy Sciences (BES) programs, they were able to multiply the insights that each …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in data, …
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