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Detection of S83V GyrA mutation in quinolone-resistant Shewanella algae using comparative genomics
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how … working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Cataloging the Microbes that Manage the Health of River Systems
… on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing researchers to …
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Massie S. Ballon
S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and social media manager for the JGI. She produced both text-based and multimedia … from Wesleyan University, and a graduate certificate in science communication from UC Santa Cruz. She is one of the …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Approved Proposals
… pdf of accepted proposals from previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function
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Considering Strain Variation and Non-Type Strains for Yeast Metabolic Engineering Applications
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … for polar and nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite …
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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