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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology … advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the mechanisms by which they reproduce can help guide breeding efforts. For example, discovering genetic … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Mateus Fiamenghi
… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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DAP-seq Drives Robust Mapping of Gene Regulation
… samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… related to such aquatic species as diatoms and kelp. Dubbed Phytopthora ramorum (pronounced: Fy-TOFF-thor-uh … in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant …
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Frederik Schulz
… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …
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Computationally Classifying Fungal Lifestyles
… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… I started this, uh, summer internship was working with big data, but something that I learned from this program was how … And I’m excited to take that with me, along with other tools that I can use to, um, perform computational biology.  …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has unveiled these motility tools in hot spring  Chloroflexota .  Ocean-dwelling  … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale projects at … span disciplines and scales,” said Tanja Woyke , the JGI’s User Programs Deputy. “These proposals highlight the …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from the …
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