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A Sorghum Pangenome Opens More Doors to Discovery
… and Environmental Research (BER) program to apply systems biology approaches to plants relevant to national energy … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Virus-Microbe Interactions of Mud Island Mangroves
… work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… They are abundant representatives of deep subsurface ecosystems. A team of researchers described how the viruses … genomes include short DNA sequences that code for CRISPR systems, which help bacteria resist foreign genetic elements … Altivir, finding them in three of the four subsurface ecosystems known to host Altiarchaea. The team then tracked how …
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You Can Move, But You Can’t Hide
… plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … The Impact In order to gain more insights into Earth’s ecosystems, researchers must examine the interactions that … nutrients or produce new chemicals. They can also affect ecosystems by killing other cells. Over time, MGEs can help …
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Alabama A&M Interns Access An Abundance of Knowledge
… Ti’Yanna Watson : Hi, I’m Ti’Yanna Watson, a senior biology major and currently attending Alabama A&M … Dent : I hope to gain hands-on experience in molecular biology and plant functional genomics, because this work is …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… in scale when running on DOE’s  exascale computing systems,” added Kathy Yelick, a professor of electrical … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Team Science Reveals Important Protein in Poplar
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Trent Northen
… mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … microbiome science through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: … by genomically divergent microorganisms. Nature Microbiology 2019 doi.org/10.1038/s41564-019-0449-y …
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Toward More Efficient Artificial Photosynthesis
… at the Max Planck Institute (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a … led by Tobias Erb, director of the MPI for Terrestrial Microbiology, successfully combined synthetic biology and microfluidics to develop a platform that mimics …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… sex chromosomes. The results were published in  Genome Biology . The team found that the shrub willow’s W …
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JGI Hosts GPU Hackathon in May
… sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t getting any …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… through genomic discovery across diverse organisms and ecosystems. Scientists are engineering next-generation … for industrial applications, and developing RNA barcoding systems to optimize microbial bioreactors. This genomic … and bioproducts production, leveraging efforts including systems-based approaches to unravel functional capabilities …
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