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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The … EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … microscopic water mold, genetically related to such aquatic species as diatoms and kelp. Dubbed Phytopthora ramorum … al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . Science. 2006 Sep …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental processes. The Science In … composition and functional potential varied across tree species and sites, reflecting ecological patterns shaped by … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a … The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic … portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and their …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience … to see, at a glance, the number of files available for various data types or taxa An at-a-glance view of how much …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of … et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the … During these cleanout days, multiple speedpaks for the various waste streams located throughout the buildings … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … to ensuring genes vital for growth and survival across various environments are expressed when their functions are …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … organisms who all consume different compounds. Microbial species will vary in activity as well; at any given time, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, … it is likely that they influence similar nutrient cycles in various environments around the world. Summary In this …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … in a study that applied metagenomic capabilities to  studying phytoplankton microbiomes  from polar and non-polar … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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