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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists … was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions with plants, …
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Evolution of a Fungal Gene Expression Regulator
… analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a … mutually beneficial to antagonistic. In fungi, 5mC is often found in transposable elements or transposons that can move … DNA and transposons in methylated cytosine clusters (MCCs – similar to the MAC clusters for 6mA), rather than in genes, …
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2024 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … capabilities will drive genomic innovation to provide the foundational biological understanding that opens up new ways …
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Waiting to Respire
… to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … genomes (MAGs) dubbed Margulisbacteria, and had found they were closely related to another group of MAGs … researchers from the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … (KBase) . Metagenomics is the study of the microbial communities in the environmental samples without needing to … it is. That’s very useful for my work and for others doing similar research.” Additionally, he’s interested in …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … Within that activity, Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared … will also include targeting biofuel feedstocks in similar studies. “We would like to look at arbuscular …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … Within that activity, Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared … will also include targeting biofuel feedstocks in similar studies. “We would like to look at arbuscular …
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Nigel Mouncey
… private sector, as well as research expertise in secondary metabolites and synthetic biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome … Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions … discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … human virome - not just those associated with disease, similar to how the Human Microbiome Project has shed light …
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Methane Makers in Yosemite’s Lakes
… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have … In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model species. The … has a large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a …
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