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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … other methods. The Impact Understanding how individual microbes interact with each other in a community, and … draft genomes with >90% completeness. These results, noted JGI User Programs Deputy Susannah Tringe , suggest …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … interactions. Terpenes are also economically important because of their use in industrial materials, pharmaceutical … two Eucalyptus species, E. grandis and E. globulus . The annotation of two C. citriodora subspecies provides an …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant Professor at … the genetic codes of plants is often challenging because in many plants chromosomes are present in more than …
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How Maize Makes An Antibiotic Cocktail
… The Science Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. Even though scientists have … into a bonanza of diverse structures. The Impact Zealexins belong to a class of chemicals called terpenoids, which have … transferring just four genes encoding these enzymes to another plant, such as  Sorghum bicolor — a  candidate …
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Virus Discoveries that Keep Getting Bigger
… to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and Aix … genomes to search for giant viruses in metagenomic reads. Another approach, single cell methods — involving flow …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Plant Datasets …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… for dozens of complex compounds, but stay largely dormant under standard conditions. As described in a recent issue of mSystems , scientists found that … roughly 30 secondary metabolites — chemical compounds not required for basic survival but often useful as …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) … Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the … of large gene families to understand enzyme activity. As another early career researcher on the UEC, she is interested …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE …
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Forming Scientific Connections and Building Community
… of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their … with them as they go forward in their careers.   Listed below are the interns, their mentors, and their summer … Efosa Omorogieva : “The entire experience of living in another city, taking the shuttle from stop to stop and having …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the … populations. Summary Eelgrass is unique in that there are not many species able to occupy the regions where eelgrass … scholarship from the China Scholarship Council to L.Y. (number 201704910807), by a fellowship to M.K. in the Helmholtz …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint … a Department of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, Greg Bonito of Michigan State University, Jonathan Eisen of the University of …
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