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JGI@25: From Life at the Extremes to Editing Genomes
… to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a … Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. A … Commun. 2017 Nov 10;8(1):1424. doi: 10.1038/s41467-017-01408-4. Tyson GW et al. Community structure and metabolism …
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Progress Reports: 2002–2020
… FY19 Progress Report … FY09 Progress Report … FY08 Progress Report …
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A Natural Mechanism Can Turbocharge Viral Evolution
… article , the team used publicly available data, approximately half of which was generated by the JGI, to uncover … the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics research scientist, found that pieces of viruses with … was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project …
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Atif Shahab
… platform streamlines project management, laboratory information tracking, and enables efficient analysis and … Mr. Shahab has extensive experience in Laboratory Information Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve … Thasneem Banu Frousnoon Project:  Optimizing transformation protocol for higher efficiency in Issatchenkia …
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Trent Northen
… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … and starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… the composition of the environmental conditions can be estimated. In short, the complexity of nutrients, constraints, …
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JGIota: Looking Back at Sequencing for Soybeans
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… peatlands, which hold much of the Earth’s carbon as well as material that can be converted to energy, are made up … less than 5% of land on Earth, peatlands store approximately one-third of the world’s soil carbon. The process to … peat from these boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding …
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John Vogel
… work, he established an efficient switchgrass transformation pipeline and, in collaboration with industrial … resources (e.g. sequenced mutant collections, transformation technology, epigenetic analysis techniques) and … Links to experimental resources and background information are available here . …
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Taking Stock of the Known and Unknown Microbial Space
… key roles in regulating global nutrient cycles. The information gained from understanding the interactions between … the team found that bacterial isolate genomes represent 9.73% of the total estimated diversity of the available … diversity of microbial genomes, accounting for nearly 49% of the total estimated bacterial diversity. The team …
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Charting Progress toward Professional Goals
… CalTeach program, mentoring under Zhong Wang. Yeah. I'm a mathematics major in my junior year going into my senior year. … trying new things out, pivoting? Oliver Benelli: I was pure mathematics before this. Although my interest was always …
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