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UC Merced Interns Reflect on Their JGI Summer Projects
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Access to Rock Star Scientists
… done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …
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DAP-seq Drives Robust Mapping of Gene Regulation
… broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first author on the … Advancing gene regulation mapping Previous methods to identify where transcription factors (TFs) — the proteins that … that a binding site has been maintained through millions of years of evolution, suggesting it plays an important …
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Promoting the Power of Viral Metagenomics
… deep-sea hydrothermal vents – and computationally identifying which sequences represent viruses that were present in …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… rapid environmental changes. Researchers were able to identify specific genes that allow the algae to adapt to sudden … more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more …
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Ian Blaby
… starchless mutant. The Plant Cell . 25: 11, 4305-4323. 2013 Blaby et. al., Experimental evolution of a facultative … Biology JGI Co-chair, People Stewardship committee (2020-2022) UCLA Molecular Biology Institute Postdoctoral Award …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it …
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Computationally Classifying Fungal Lifestyles
… methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the … of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes …
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Emiley Eloe-Fadrosh
… from host-associated and environmental samples to identify and characterize genomic information from uncultivated … enabling microbiome science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are … 2020 NIH Early Career Investigator Travel Fellowship, 2013 and 2012 ZoBell Fellowship, Scripps Institution of …
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Cataloging the Microbes that Manage the Health of River Systems
… of river health diagnostic systems to monitor for and identify land use or water quality changes. Summary Rivers are key … Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National … under award numbers DE-AC02-05CH11231, DE-AC02-06CH11357, DE-AC05-00OR22725 and DE-AC02-98CH10886. …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to determine what genes the …
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