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First Monoploid Reference Sequence of Sugarcane
… now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a … To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can … in part on these positive results, in 2017, JGI approved a CSP proposal from the international team to complete the …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… of the innovative research  being proposed by this year’s CSP investigators,” said Tanja Woyke, Deputy Director of … including one previous New Investigator awardee.  The CSP Annual call is focused on large-scale genomic science … projects relevant to the DOE’s Office of Biological and Environmental Research (BER) missions in sustainable biofuel …
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The Power of One, Amplified
… 500 single cells from a single low diversity hot spring sediment sample. Their work showed that single cell genomics …  extracting snippets of microbial genomes directly from environmental sequence data, by piecing each genome together … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… versions appear side-by-side below: Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… regions. Most plant species have adapted to their local environments; for example, crop and ornamental seeds sold for … varieties that have high productivity across a range of environments is becoming increasingly important for food, fuel … what genes affect the plant’s adaptability to various environmental conditions. “To accelerate breeding for  …
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Frederik Schulz
… Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics … binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature …
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Matthew Kellom
… in the interactions between microbial life and environment, and using metagenomics to study these complex … are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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A Natural Mechanism Can Turbocharge Viral Evolution
… of evolution allows microbes to adapt to changing environments. The Science The first step in the deadly dance … that discovery, DGRs have been found in other viruses, bacteria, and archaea. But how widely distributed they are, … evolution — DGRs — allows microbes to adapt to changing environments. It also sheds light on why the rapid injection of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter … clean up a Superfund site. The Impact The Comprehensive Environmental Response, Compensation, and Liability Act …
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Ben Bowen
… discoveries, supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental objectives. … Exometabolite niche partitioning among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., Sun, …
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Eelgrass Proves to Be Much Younger Than We Thought
… spread quickly and establish itself in a variety of new environments.  This all started roughly 250,000 years ago, when … more at-risk species that live in Atlantic Ocean environments and the plant’s carbon sink capabilities.  … Energy Joint Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of …
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Cultivating Symbiotic Antarctic Microbes
… trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with the humans and the …
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