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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… ecosystems. Viruses rarely grow well in environmental samples brought back to a lab, because they often need … to replicate. Sequencing genetic material directly from samples sidesteps these challenges, since it doesn’t require … existence. Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of …
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JGI Launches Latest Strategic Plan
… to begin a month later. In parallel with the intricate move preparations, the JGI has released its newest 5-Year … our Berkeley Lab colleagues, particularly with the other user facilities including the Advanced Light Source, the Molecular Foundry, NERSC and ESnet, as well as externally to prospective partners to generate awareness of and …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the … portal Phytozome. The combination of field data and genetic information has allowed the research team to associate …
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Supercharging SIP in the Fungal Hyphosphere
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have … to the process. This automation lets researchers study more samples and provides better resolution by splitting the DNA … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … with the proper permits, to the refuge to collect soil samples from multiple locations. Back in the classroom, JGI … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Tracking the Origins of Methane-Producing Microbes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel archaeum from … lineages. The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … for its performance, and then applied it to environmental samples from the Great Boiling Spring Geothermal Field in … activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of these communities via whole genome sequencing of the samples, without being able to distinguish which gene … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … could be assigned to viral lineages, and predominantly in samples from marine (55%) and freshwater (40%) environments. … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Data Ecosystem
… annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales …
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Corals in Hot Water Get Help From Their Microbes
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