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Triggering Morel Fruiting
Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … bases — a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the … database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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David Goodstein
With a background in experimental and computational surface physics, Dr. … at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the … Advisory Board member, InterMine (www.intermine.org) … Education … Selected Publications … Awards and Service …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient … due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research support …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … University of Calgary and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … in an effort to create improved varieties for biomass production. He did his postdoctoral studies at the Carnegie … 2008 CSIRO McMaster Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, RNA viruses store their …
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JGI Workshop at 2025 Aquatic Sciences Meeting
Details forthcoming at ASLO 2025 Aquatic Sciences Meeting …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases themselves can also … Fungal Genomes initiative of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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