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JGI Early Career Researchers Featured in mSystems Special Issue
… years of innovation could look like. In one article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … please visit  energy.gov/science/office-science . … IMG/VR data portal …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? … to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … JGI’s early sequencing of C. reinhardtii became available, data mined by the JGI shows that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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2025 NeLLi Symposium
… and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … Dartmouth University … Metagenomic and single-cell sequence data have provided a means to access novel microbial … archaeal and microeukaryote diversity cataloged and taxonomically classified to date. Under the “sequence to function’ …
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Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to access … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … all of you have seen that in Ray and it has been especially called on in the move to the new building where that was …
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Kjiersten Fagnan
… bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s … flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … to decay wood were widely conserved across species. Specifically, many species had very similar plant cell wall …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
In order to do so, these organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang … the goal is to create an entirely human-generated yeast genome. …
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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