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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … sample and then sorting these cells so that their DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing …
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Three Join the JGI User Executive Committee
… UEC. As a user of the JGI and the Environmental Molecular Sciences Laboratory, another DOE user facility, she will … laboratory researchers. This will help the JGI shape its programs, capabilities, and resources to best meet the broad base of user community needs. …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Steven Hallam of the University of British Columbia was already collecting ocean water samples when The Blob started. … colleagues collected more than 270 water samples. Genomic DNA extracted from the water samples were sequenced by the …
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Annual Genomics of Energy & Environment Meeting
… invited talks emphasize how the research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology … basis to the worldwide scientific community can advance your research goals. Keynotes: M. Francesca Cotrufo, Colorado …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a Superfund site. The chemical PCE … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the …
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The genome of the polyextremophilic yeast, Naganishia friedmannii, reveals adaptations involved in stress response pathways, carbohydrate metabolism expansion, and a limited DNA repair repertoire
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Quantitative DNA Stable Isotope Probing Identifies Active Microorganisms Assimilating Volatile Fatty Acids in Full-Scale Enhanced Biological Phosphorus Removal Processes
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Plant Microbial Interactions Group
… 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 … 10.1073/pnas.1907500116 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 …
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Kjiersten Fagnan
… the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also … how the JGI supports the entire data life cycle through resources including the JGI portals, and our broader data ecosystem. … National Microbiome Data Collaborative: enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). …
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Promoting the Power of Viral Metagenomics
… and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a … best ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected …
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Dan Rokhsar
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