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Streamlining Regulon Identification in Bacteria
… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi …
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Evolution of a Fungal Gene Expression Regulator
… date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their analysis goals. Offering this tool establishes the JGI as a leader in single-cell genomic amplification at a …
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Pinning Down a Piece of Photosynthesis
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Related to Iron, an effort that was interdisciplinary and collaborative. “All the user facilities that we worked with …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting … science and well-thought-out questions. We are looking for projects that can’t easily be done at a core facility, but …
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A Community Resource for Secondary Metabolite Researchers
Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles … analysis.   Overview of metabolomics products At JGI, in-depth molecular profiles are generated for …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the way to seed but prevent the seeds from falling,” said JGI Plant Program head Jeremy Schmutz , who is also a …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual … by short final presentations attended by more than 75 JGI staff. According to Axel Visel and Zhong Wang, founders … in some cases daily, check-ins with their mentors to ensure projects progressed despite the challenges of remote work. …
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Strain Engineering
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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