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Secrets of the Needles: What Microbes do on Conifer Leaves
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New Research Sheds Light on Diversity in the Deep Sea
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Olpidium zoospores remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium … to the sequencing effort by the JGI and ZyGoLife in recent years. With the much more extensive taxonomic and genetic … diversification events occurred approximately 650 million years ago, and that the first terrestrial fungi predate the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… more than once, and these events took place a million years apart: the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a more recent … anticipated with only minor gene loss even after a million years.” Reference genomes for  B. distachyon ,  B. stacei …
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Leo Baumgart
… DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” Neri … of efficient, automated approaches to analyze and classify sequence data at this scale is essential.”   …
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The Power of One, Amplified
… in, on, and around the planet remain unknown. In recent years, advances in sequencing technologies and bioinformatic … diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from …
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Help from Citrus’ Bitter, Hardier Cousin
… JGI’s Daniel Rokhsar, published over the last half-dozen years, on the ancestral origins of  Citrus sinensis , the …
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Waiting to Respire
… ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified … that even enzymes that evolved separately for billions of years have some common signatures of muli-substrate …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an email. “Therefore, …
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A Community Resource for Secondary Metabolite Researchers
… expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites databases have been made …
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