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… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … either jumpstart acceleration or optimize their code on GPUs. While the  OLCF is organizing nearly a dozen hackathons … to the Team Proposal tab to submit. For more information about the 2019 GPU Hackathons, go to:  …

Congratulations to Susannah Tringe , one of eight scientists and engineers who … as drivers of methane production, nutrient cycling, greenhouse gas emissions, and water recycling.” Tringe is the … of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She …

… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … of essential genes in metabolic networks that were missed using traditional approaches. This novel form of … the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … Berkeley; Gregor Mendel Institute of Molecular Plant Biology (Austria); Leibniz Institute of Plant Genetics and …

… genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the … developments at the JGI and KBase toward integrative biology and hear from researchers who are applying genomic … with the JGI Community Science Program and how you can use the KBase system to accelerate your plant genomics …

… so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, well, the little stuff! People hold …

… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …

… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … give researchers a way to access much more information about fungi in these environments. “Now with these new tools … soil samples of these varied biomes; the forests share only about 20% of their fungal species. To make useful …

… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … they are found everywhere, comparatively little is known about viruses, much less those considered large and giant. … the globe, then using these sequences to make inferences about the biogeographic distribution of these viruses in the …

… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a … where we’re moving from when my father was born, of about 2 billion people on the planet, to you know, within my …

… they need to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal … new views of these relationships.  Recently , researchers used population genomics to find that while archaeal … cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, …

… crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … pathways could lead to the discovery of genes that could be used for multiple biotechnological applications. These … HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the fire moss …