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The JGI Data Portal: Improving User Experience
… alternative to the Genome Portal — seeks to more broadly represent JGI’s data. It includes several user-validated … a calendar reminder to download restored files Copy-and-paste curl commands for faster API downloads “Currently, our … help us build a solid knowledge base that may inform future updates to one (or more) of the JGI Portals.” …
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Back in the Lab: the 2023 Summer Intern Experience
… for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns …
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Programs & Platform Leads
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JGI@25: Strengthening Soybean
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Unlocking the potential of designed microbial consortia: A breakthrough for sustainable waste management and climate resilience
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2025 NeLLi Symposium
… Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and … genomic coverage. Experts in cultivation and environmental genomics will work together to develop recommendations for … and functional characterization of this novel diversity represents an ongoing challenge. This symposium series will …
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Fungus Fuels Tree Growth
… physical traits and gene expression when the fungus is present. The Impact Black cottonwood, or poplar, ( Populus … team also observed that the plants instead put more energy into growth, noting they increased expression of genes …
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CSP Large Scale Call
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… they both actually doing the job? By analyzing the enzymes present in the complex organic matrix of the forest floor, a … nutrient. The Impact This study is the first to dig into a forest floor ecosystem to discover what carbon- and … microbes they belong. This study provides further insights into the microbial involvement in carbon and nitrogen …
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Frederik Schulz
… sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find … protists. These approaches enable novel insights into the diversity and important ecological roles of … Krinos et al. 2024. Time-series metagenomics reveals changing protistan ecology of a temperate …
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Charting Progress toward Professional Goals
… from their mentors, and apply their newfound knowledge to future career paths.  To learn more about their summer … for that. But the one thing I've learned so far with like, presenting to like, my group and different other people is … was my research results not being the most promising. Going into the project, like, I kind of knew that my projects were …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… Stable Isotope Probing (SIP) has opened vast windows into specific activities catalyzed by microbial communities. … researchers to go beyond understanding which microbes are present in a sample, to generate data about which organisms … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …
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