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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … assemblies by JGI and uploaded to IMG? A:  Depending on the project setup, we can include as part of our data analysis …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … Many fungi have beneficial symbiotic relationships with plants and bacteria; in many instances, fungal physiology is …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … to work on fungal genomics and the fact that I got to do a project involving over 12,000 fungal genomes was just …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … want to help JGI find a solution to this problem.” He also wants to assist JGI in extending its activity-based cell … shaping the assembly of fungal endophytes across land plants and lichens, mentioned her interest in guiding JGI …
Learn more
Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his … which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing … BS in Biochemistry and Cell Biology, University of California, …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding …
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What Happens Underground Influences Global Nutrient Cycles
… EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … functions that may be relevant to both algae and land plants.  Within the biogeochemistry group, one of the four … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Webinar: Introducing the BioSANS capability
… The BioSANS instrument is at the Center for Structural Molecular Biology … the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the Biological Small-Angle Neutron Scattering … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations … Molecular Sciences Laboratory (EMSL) , successful applicants can also access resources at NEON. This includes access … assignable assets program. Q: For a NEON Assignable Assets project, does the data produced become public as well? A:  …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … field(s) Sorghum has long been one of the JGI’s  Flagship Plants , on the short list of plant genomes deemed most … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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