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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … through responsibly managing our people and resources.     Director's Perspective Over the last year, the U.S. …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria … scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their updated strategy … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , was  recently … . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Logos and Templates
… The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal JGI logo – indicia …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and training … supervision of their mentors, they were responsible for all steps of the experiment from growing and inoculating the … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, … work also used resources of the National Energy Research Scientific Computing Center (NERSC) , which is supported by …
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Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA … RNA Extraction Protocols: … iTag protocols: …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on …
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Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… In  Nature Communications , researchers describe a strategy to recover high value products from human waste. They   … hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing …
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