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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the … we caught up with JGI staff, collaborators and users to see how software and supercomputing capabilities have evolved to … for over 20 years in order to better understand how the freshwater ecosystem works. When she set out to …
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A Sorghum Pangenome Opens More Doors to Discovery
… of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource … into drought tolerance, biomass production and more — however, a single reference genome shows only one slice of the adaptation possible for this …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… for dozens of complex compounds, but stay largely dormant under standard conditions. As described in a recent … activity and chemical output over time, the team mapped how the bacterium redirects its energy, building blocks and … mapped in this detail before.     The Impact By revealing how a single stress signal rewires a bacterium's entire …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most … ZW rather than ZZ encodes for females. To better understand how sex determination works in shrub willow, researchers … response regulator that was expanded in a palindrome and shown to be undergoing gene conversion in willow. This gene …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not … researchers have been able to gain further insights about how microbes have adapted to thrive in polar ecosystems. The … successfully cultured two strains of Nanohaloarchaeota and showed they required cell-cell contact with the Antarctic …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface … deep subsurface ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  microbes resist. The battle waged below the Earth’s …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… Gary Trubl, a virologist and postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly … bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature Microbiology an important … users will enable us to assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI …
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software … elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the … — providing a perspective on giant virus diversity, and how sequencing and bioinformatics have sped up the study of … Data Portal were instrumental to  a study that looked into how soil viruses , and in particular a chitosanase protein, …
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