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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa … bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. … in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the soybean cyst …
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Open Frameworks Training the Next Generation of Scientists
… contributions—including sequencing services and analysis—to participants. Over the past two years, Myco-Ed has been … students developing skills in fungal biology and genomics. Fungi can be better understood through reference genomes, … no reference genomes. It’s a key problem to solve because fungi are very diverse organisms with potential …
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A Powerful Technique to Study Microbes, Now Easier
… collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity …
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User Advisory Committees
… of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … the relationships we nurture in our workplace and seek to establish with our stakeholders. The guiding principles … and the annual meeting. The UEC also acts as a liaison to the user community and the broader scientific community, …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … we caught up with JGI staff, collaborators and users to see how software and supercomputing capabilities have evolved to … for over 20 years in order to better understand how the freshwater ecosystem works. When she set out to …
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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from the JGI … — providing a perspective on giant virus diversity, and how sequencing and bioinformatics have sped up the study of … Data Portal were instrumental to  a study that looked into how soil viruses , and in particular a chitosanase protein, …
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Behind the Paper: Hot Springs Metagenomics
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI recognized … Grigoriev’s recent work includes the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant … new genomes highlighting the diversity of white rot fungi in the genus Lentinula. Dan Rokhsar looked to the …
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Kjiersten Fagnan
… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked closely with …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … been found in other viruses, bacteria, and archaea. But how widely distributed they are, and the roles that they … B.G.P. was supported by the Marine Biological Laboratory, by the National Science Foundation’s XSEDE computing …
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Different threats, same response
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