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Enlarging Windows into Understanding Gene Functions
Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering …
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Streamlining Regulon Identification in Bacteria
… environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … S. coelicolor . With results from the research, RIViT-seq data have increased the identification of the number of …
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Busting the Unbreakable Lignin
Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes … . The study’s pivotal NMR (nuclear magnetic resonance) data, gathered using magnetic fields to diagnose electronic …
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Natural Prodcast Episode 4: Nancy Keller
Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including data from several DOE-mission relevant proposals through … a multi-step approach to mine, bin and then filter the data for the major capsid protein (MCP) to identify NCLDV …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …
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What Happens Underground Influences Global Nutrient Cycles
Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place … drought and multi-isotope labeling experiment, and the data will allow them to better understand the impacts of …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, …
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DOE JGI Interns Share Their Summer Experiences
Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time … Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; Sean …
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Trent Northen
Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  …
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Natural Prodcast Episode 5: Brad Moore
… before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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