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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace … so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … CSP  New Investigator call for proposals.  Tips: Contact us with your questions (jgi[email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Yasuo Yoshikuni
… and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology Pathway Engineering group. His research focus includes engineering of non-model yeasts for production … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … researchers have been able to gain further insights about how microbes have adapted to thrive in polar …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … Research Division. As a postdoc, her research focused on stable and accurate computational methods for … Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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