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… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … for every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … relative of the candidate bioenergy crop switchgrass and a JGI Flagship Plant. All three  Brachypodium  grasses have … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …

… the direction of programs and initiatives to enhance the JGI’s preeminence as a national resource. Members report to the JGI Director. …

… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction …

… Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of the tetraploid M. sacchariflorus whole genome sequence data was funded by the BBSRC Core Strategic Programme in … Datasets …

… by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant to J. …

… Through the JGI-UC Merced Genomics Internship, graduate students Candace … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of … lab. My favorite thing is the mentorship provided by JGI. Everyone at JGI is so nice and helpful.”     Mo Kaze, …

… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite … important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical chemistry, …

… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …

… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have …

… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the Computing Sciences …

…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles … analysis.   Overview of metabolomics products At JGI, in-depth molecular profiles are generated for …