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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … such as tourism and recreation, on which coastal and island nations, like the UK, depend, said Mock. “I think …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … Danforth Plant Science Center, where his group focuses on interactions underlying plant adaptation in different … and evolution, he helps manage the Bacterial-Fungal Interactions Science Focus Area. He has partnered with the …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  … Population and evolutionary genomics of host–microbiome interactions in Zostera marina and other seagrasses). The …
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Identifying the Microbial Cleanup Crew at a Superfund Site
PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led … (ERD.) It is dependent on the presence of the existing microbes in the groundwater and adjusting the environmental …
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Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of biofuels, biochemicals and other bioenergy solutions.  …
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Emiley Eloe-Fadrosh
Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome … plant and algal functional genomics, inter-organismal interactions, understanding natural communities important …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some … . They looked for genes known to be involved in fungal-host interactions and identified 84 gene families that were …
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