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From Berkeley to Binghamton: Tracking Strawberry Evolution
… a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant Professor at … the genetic codes of plants is often challenging because in many plants chromosomes are present in more than …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE …
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) … Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the … of large gene families to understand enzyme activity. As another early career researcher on the UEC, she is interested …
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Forming Scientific Connections and Building Community
… of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their … with them as they go forward in their careers.   Listed below are the interns, their mentors, and their summer … Efosa Omorogieva : “The entire experience of living in another city, taking the shuttle from stop to stop and having …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the … populations. Summary Eelgrass is unique in that there are not many species able to occupy the regions where eelgrass …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting … roots. Then, comparing with control seedlings which were not treated with fungi, they used multiple approaches to …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), relied on a … other polyploid plants have gone extinct or are unknown),” noted Pilar Catalan of the Universidad de Zaragoza, one of …
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Enlarging Windows into Understanding Gene Functions
… affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of … for the absence of all the other letters of the alphabet. Yet the specific sequence of these four letters … a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting … roots. Then, comparing with control seedlings which were not treated with fungi, they used multiple approaches to …
Learn more
Getting to the Bottom of Fungal Functions Across Earth’s Forests
… the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — one thing is for sure: …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … plant species. It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome …
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