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JGI Welcomes New UEC Members
… affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the organization of the JGI Annual Meeting. Any investigator who has been an … who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, respectively. To view the …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) … summer research collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP … Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI DNA Synthesis Platform Ben Bowen and Katherine Louie for the …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify … a single RNA piece that recognizes a particular area in the DNA, to determine which targets might benefit from an …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … varieties that have high productivity across a range of environments is becoming increasingly important for food, … is assembled into sequences of 5.5 million basepair (bp) in length, while the previous version had an average of 25,000 …
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Expansion of the global RNA virome reveals diverse clades of bacteriophages
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … bacteria aren’t usually visible without the assistance of microscope. “It’s 5,000 times bigger than most bacteria. … along with its life cycle. For most bacteria, their DNA floats freely within the cytoplasm of their cells. This …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and … sample and then sorting these cells so that their DNA could be sequenced. Their protocol,  detailed in the …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a … analysis, and ortholog function descriptions from nearest phylogenetic neighbors. Our pipeline allowed us to add …
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Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
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