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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  … National Laboratory was conducted under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part … 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to D.H., the GENOBIOREF …
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Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these … places that are considered to be inhospitable to humans are of particular interest. Matt also supports various CSP and …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … science, energy conversion and water treatment as well as microbial ecology with a focus on metabolism and ecosystem … senior scientist and the BSISB director.  The JGI’s Tanja Woyke, head of the Microbial Genomics Program, is …
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User Support
… the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … a Login Walkthrough and FAQ . –– The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to …
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Work With the JGI! Tips for a Winning CSP Proposal
… The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and … the spring. In this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project …
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Publication Policy
… The purpose of this policy is to establish communication norms around … their work, while also adhering to the authorship policies of the journal in which the research is published. The JGI … Feel free to reach out to your Project Manager or JGI Science Program lead(s) to discuss authorship at any point. …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The …
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Webinar: Introducing the BioSANS capability
… Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how … on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The Expanding Universe of Methane Metabolisms in Archaea
… issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis … two metabolic pathways “Up to this point, most phylogenomic trees have relied on only one korarchaeotal representative,” …
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Tomas Tyml
… and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding of the roles these associations play in the evolutionary history of life. …
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