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Triggering Morel Fruiting
… Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and well-thought-out questions. We are looking for projects that can’t easily be done at a core facility, but …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We … advanced genomic capabilities. This year we brought online the latest short-read technology, the Illumina NovaSeq X …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is … their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics … portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Learning to Look
… Machine learning approach significantly expands inovirus … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … affecting the microbe’s own eukaryote host. As their small genomes can be easily manipulated through genetic …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based … supported for his work on  Auxenochlorella genome sequencing and assembly in Berkeley, in part, through the Laboratory Directed …
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Genomics of alphaproteobacterial methylotrophs
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