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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy Research Scientific … JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best … assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten Fagnan touted the …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, … Yasuo Yoshikuni is the DNA Synthesis Science Program Head at the JGI. Click to learn more about the …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… the plant and illuminates the significant role sex plays in how the moss grows, stores carbon and responds to stress. … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and … sequences showed not only that the sex of a sphagnum plant informs how it weathers stress, but they ultimately yielded …
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JGI announces final round of 2022 Functional Genomics awardees
… functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP … is July 31. You can learn more about our Community Science Program here .  …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… out these distractions. Combining genome and transcriptome information allowed the team to have a much more … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … down and away from the roots one goes, the more bacteria show up. The data underscore what was already suspected: …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the minimum amount of what’s allowed in drinking water. However, in the deeper sites, toxic chemicals remain.  To … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze the resulting …
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A Plant Root Atlas for Tracking Developmental Trajectories
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the paper also aligns with his DOE  Early Career Research Program (ECRP) award, which is also focused on single-cell … and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader perspective:  …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… can thrive in changing conditions. A recent study shows that when salinity is reduced in its environment, this alga reveals a remarkable ability to adapt to stress and rapid environmental changes. … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks … State University and the University of Michigan studying how virus infections cause significant metabolic changes in … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of … that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes …
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Gene Expression: From On-Off Switch to Dial
… Scientists have developed a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … were previously missed in knock-out screens. These results show that this singular library synthesized by JGI was …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial … of Energy (DOE) Biological and Environmental Research (BER) program to advance a fundamental understanding of genome … Scientists have already used this alga to understand how genes with unusual structures work in green algae. The …
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