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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In … (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past experience in developing … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …
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Introducing New Members of the JGI User Executive Committee
… analyzed use-restricted data without contacting the lab that generated that data,” he said in his candidate … a breadth of institutions, research topics and career stages. The election period concluded on December 23, 2021. …
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New Research Sheds Light on Diversity in the Deep Sea
… conditions — like temperature, pH levels or the availability of certain nutrients — influence the makeup and … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … of the microbes found in any environment can be grown in a laboratory — and rumen microbes are no exception. Back in … paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory and used to identify the microbes involved in … Science Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has unveiled these motility tools in hot spring  …
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David Goodstein
… analysis and data distribution for the JGI's direct collaborators and the wider plant science community. Dr. … minus strains reveal extensive structural mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times their dry weight in … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and the HudsonAlpha Institute for Biotechnology …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) Joint … at Pacific Northwest National Laboratory and Lawrence Berkeley National Laboratory, respectively. The team’s …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and biological … genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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JGI@25: Studying Sorghum’s Survival Skills
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … in common with certain other cereal crops: It performs C4 photosynthesis, which is the fastest way for plants to … Tolerance in Sorghum (EPICON) begins. Peggy Lemaux (UC Berkeley) and her team studied sorghum plants in drought …
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