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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … for studies on organisms with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … Sciences Laboratory (proposal ID 49615), which is a DOE Office of Science User Facility. This facility is sponsored …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial … by the National Science Foundation and the National Institutes of Health. The work conducted by the U.S. Department of …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … for technical help, feedback or a guided walk-through of the new Data Portal.  …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing …
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ARHGEF9 disruption in a female patient is associated with X linked mental retardation and sensory hyperarousal
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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