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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … to mention Allen wrenches. The fungi are similarly armed with a variety of PCWDEs to first break down the components … them into simple sugars. More importantly, when faced with a veritable buffet of carbon sources, these fungi …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … set of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, … plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you can use …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the … EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, … 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… users to explore data and share reproducible analyses with collaborators and the broader community. The approved … University of Minnesota to establish the Natural Products Genomics Resource Center. To help enable the discovery of … are interested in sequencing secondary metabolite-producing environmental bacteria from the Tiny Earth collection. The …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from the University of Duisburg-Essen (UDE), Germany with the aim of intensifying collaborations in the fields of genomics, structural biology, bioimaging, and water … SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University of …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … that could be applied toward DOE-relevant bioenergy and environmental interests.  Summary As the planet has changed, … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has … alumni, and other staff gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as …
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2025 Progress Report
… of Science user facility supported by the Biological and Environmental Research program, the Joint Genome Institute … research community in studies of complex biological and environmental systems. We optimize our service to the …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. …
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Ben Bowen
… scientific discoveries, supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental objectives. … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. …
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Boosting Small Molecule Production in Super “Soup”
… strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … University describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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