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DAP-seq Drives Robust Mapping of Gene Regulation
… the power grid of gene regulation is finally coming into clear view. Behind the Breakthroughs: Advancing gene … the same cost, and it actually made the data cleaner.”   By integrating DAP-seq binding maps with single-cell RNA … to use it, find new things and push the field forward.” By integrating transcription factor binding maps with …
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Data Ecosystem
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JGI announces 2025 Functional Genomics awardees
… research from scientists who translate genomic information into biological function. Through our  CSP Functional … enhance understanding of gene and genome function. Tapping into these functions allows researchers to use them for … and bioengineering to advance U.S. energy independence and biotechnology innovation. Below find a list of the 11 …
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JGI@25: Building a Better Bean
… Jeremy Schmutz of the JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota State … seemingly humble common bean has fueled further research into disease tolerance in crops, drought- and … to go out and collect wood to cook, not just like walking into your kitchen,” McClean said. “…The less you have to do …
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Understanding Wildfire Recovery, Starting in Soil
… of a recovering soil microbiome provides a window into how to model and track the forest recovery process.  … at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for User Science (FICUS) … FTICR-MS analyses were performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… for plant health. It also provides further insight into the ecology and functional potential of the …
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You Can Move, But You Can’t Hide
… ecosystems. A software tool  recently described in  Nature Biotechnology  called geNomad identifies and classifies MGEs … EDGE platform. The Impact In order to gain more insights into Earth’s ecosystems, researchers must examine the … the JGI partnered with the NMDC to integrate this tool into the NMDC EDGE platform. NMDC EDGE’s easy to use …
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Silver age of GOLD introduces new features
… Database has matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Using Team Science to Build Communities Around Data
… Research (INRAE) focused on in-depth exploration of ecology-related groups of fungi. The 1KFG project has … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … in gene function across the phylogeny — and link these into our DOE crop plants, so we can learn from evolution …
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … library leads to photosynthetic defects, offering insights into how algal ponds can regulate photosynthesis under …
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Massie S. Ballon
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… nutrient. The Impact This study is the first to dig into a forest floor ecosystem to discover what carbon- and … microbes they belong. This study provides further insights into the microbial involvement in carbon and nitrogen … JGI and EMSL’s contributions were enabled by the Facilities Integrating Collaborations for User Science (FICUS) …
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