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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… the Webinar: Q(uestion): Who can apply for this proposal call? A(nswer): We work with people from all around the … We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a … to their resources. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
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David Goodstein
… gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative … responsible for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Switchgrass has multiple naturally occurring ploidy levels, called cytotypes, across the species. These are primarily … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … ," is among the five focused on tool development. Specifically, the goal of this work is to develop tools, curated …
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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JGI Announces 2023 Community Science Program Awardees
… proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … their success. “ The CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… in the chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … his team then linked those species-level observations with data on microalgal communities across different ocean …
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … capability; no one else can do it in the world at this scale.” A bottleneck in the DAP-seq protocol, however, is … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … its DNA Synthesis Science Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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