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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Filling in the Plant Tree of Life
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Len Pennacchio
… contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA Synthesis, and Metabolomics) as … User science. … Complete Publications Genomic Technologies Program Defining the vast landscape of gene regulatory … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… secondary metabolites and associated genes are great resources for bioremediation, new agricultural applications or … on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome …
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The Case for Conservation
The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact … comprise a full third of each moss genome, and are almost four times the size of the next largest chromosome. As the … so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how lessons from …
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Matt Blow
… as a project scientist and then as a research scientist on projects to develop functional genomic technologies and to … the lead of the User Support Analysis group. The group performs custom analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other functional …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … in activity as well; at any given time, many species in a community may be in ‘low power mode’, where they do very … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab …
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A Natural Mechanism Can Turbocharge Viral Evolution
… a fishing line, without harming the rest of the microbial community. The study’s publicly available dataset gives … under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing … DE-AC02-05CH11231 through the Community Science Program (CSP), the G. Unger Vetlesen and Ambrose Monell Foundations, …
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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JGI announces 2024 New Investigator portfolio
The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and from PIs who have … proposals — through the New Investigator call under our Community Science Program . Below find a list of researchers …
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