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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory …
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Webinar: PhycoCosm Tutorial
… algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your … A(nswer): If you find that our trees are incorrect or need to be changed, please contact us and we’ll work work it out … project? A: Combination of: DOE mission relevance Science User community – trying to produce resources for …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … M, Louie KB, Mueller M, et al. Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … de Zaragoza and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from the JGI … Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor … York Times 2022 List of Firsts as well as other year-end science discovery lists.  Updates to the Genomic …
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Training the Next Generation of Talent
… of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate student in the …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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UC Merced Interns Reflect on Their JGI Summer Projects
… with JGI scientists on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with their mentors to practice and develop presentation skills as well as … genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 …
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Massie S. Ballon
… and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, the team aims to broaden … collaborators.  Ms. Ballon is a molecular biology-trained science communicator with extensive experience shaping … science, including crafting technical reports, developing educational content, and writing feature profiles. She is …
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Virus-Microbe Interactions of Mud Island Mangroves
… research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) program , which awards graduate students the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user facilities. Baker had worked with …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved … published in  The Proceedings of the National Academy of Sciences bridges this gap, by tracing the evolution of a … as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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