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Corymbia Genome Expands Terpene Synthesis Knowledge
… across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … metabolites which play a part in biotic and abiotic stress responses. Overall, this study improves our understanding of … Eucalyptus grandis on Phytozome Data portal …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest … been approved through the annual Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They were selected …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and determination as they came onsite. From data carpentry to science communications, their schedules were filled with … trainings that they later reported were incredibly valuable to their careers going forward. Watch this short video (below) to hear more about the summer from their own …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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The Earth BioGenome Project 2020: Starting the clock
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy Research Scientific … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Meeting report: International soil virus conference 2024
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The … | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been widely adopted. The new genome assembly resolves both …
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First Monoploid Reference Sequence of Sugarcane
… “polyploid”) and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of … of the genome by harnessing information from a sequenced related species – sorghum. The Impact Sugarcane produces 80 … now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a …
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