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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Tracing the Evolution of Shiitake Mushrooms
… highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … through the Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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Mike Sneddon
… bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the NGS Software team and metagenomic data platform … discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The …
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Building Wet and Dry Lab Skills
… funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes … the Oakland soccer club this summer.  Want to learn more about their experience? Watch the short video below:  Video …
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Gotta Catch 'Em Gall
… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in which she’s studying a special …
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course “Evolutionary and Comparative Genomics”
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Research (BER) and is a contribution of the Scientific Focus Area “Phenotypic response of the soil microbiome to …
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A Natural Mechanism Can Turbocharge Viral Evolution
… The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley …
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