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… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in … The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …

… plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar featured  … et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …

… In honor of the JGI's 25th anniversary in 2022, we have … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published …       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual …

… projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal interactions, and predictive biology, … For the CSP Large Scale call, a Letter of Intent (LOI) is required by the due date printed below. … further instructions via email.   Human or animal disease-related work will NOT be considered under this program. …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …

… doing in the Guadeloupean mangroves where it was found. The study was featured on the  New York Times 2022 List of … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three … thought. Instead, it turns out this fern has been co-opting genes from bacteria. Schmutz was also involved in  a …

… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that …

… in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes … lifestyles found in the Antarctic lakes and offers a genetically-tractable model system that could help … The researchers then pursued the Nha-C strain for further study, tagging the cells with individual fluorescent probes. …

… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her … great impact on these algal blooms. So Vardi and his group study one specific alga,  Emiliania huxleyi  (sequenced by …

… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the submission of samples for sequencing, or the …