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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and … proposal by allowing researchers to test a project on a smaller scale as a proof-of-concept or by allowing the …
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the … Through a Laboratory-Directed Research and Development project supported by Berkeley Lab, JGI and Foundry … developed with funding from the Defense Advanced Research Projects Agency (DARPA) as part of the Bio-inspired …
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Building Sphagnum Genomic Resources
… (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … such as sphagnum’s associations with methane oxidizing bacteria, nutrient uptake, and its productivity and … genomes for seven novel species of Acidobacteria through an approved CSP proposal. The researchers …
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Tanja Woyke
… Karls University Tübingen (Germany), Dr. Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in … Analytics 2020 van Niel International Prize for Studies in Bacterial Systematics 2020 Elected fellowship in the … Reviews Genetics, ISME J, Nucleic Acids Research, DOE Small Business Innovation Research (SBIR) grants, UAEU …
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Partnerships: Adopt-A-Genome
… A primary purpose of this project is to bring educators from a broad range of … R. Seshadri, M. Escobar. Draft genome sequences of two bacterial type strains isolated from a methanogenic … Draft genome sequences of three ruminant-associated Eubacteriales: Eubacterium ruminantium ATCC 17233T, …
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Methane Makers in Yosemite’s Lakes
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… the microbes in a single drop of water could outnumber a small city’s population, the number of viruses in the same … not harmful to humans could be even larger. Viruses infect bacteria, archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant viruses …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … effective in achieving higher quality results compared to smaller individual efforts. This is also the type of … the world. One expanded group is of viruses associated with bacteria; until now, most of the known RNA viruses have been …
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Nikos Kyrpides
… core at Integrated Genomics Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of … Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature … Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He … Your ethics always point due north.” Joe Harkins served as project lead on the new building that would eventually rise … work and persistence.” Ray is succeeded at his Ops Deputy post by  Nick Everson , the person Ray hired in 2007 to …
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Mission
… targets (i.e. corn, sugarcane, rapeseed/canola, palm oil). Projects focused on environmental treatment, mitigation, or … substances (PFAS), and harmful algal blooms. Projects focused on the fundamental science of animal and … host organisms, are out of scope, as are marine-focused projects (more than 185 km from land). …
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