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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Computationally Classifying Fungal Lifestyles
… known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … Genomes Project, which aims to provide a reference genome for each of the fungal families. Researchers had access to … genomes, they also built a high-quality phylogenetic tree for  Dothideomycetes . The data allowed the team to …
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An Earth Month Look at Sustainability Efforts at the JGI
… those big goals with their everyday activities, striving for sustainability in lab spaces as well as offices. These efforts dovetail into sustainability commitments for the wider Berkeley Lab. “We’re shifting now to our … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI on the 2020 Highly Cited Researchers List
… highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … a gene related to seed dispersal in wild populations for the first time. I-Min Chen ,  Natalia Ivanova ,  Nikos … , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that led to the …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada … ecology. We also know little about where to collect the California Cone Snail  Californiconus californicus (and cone …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Yasuo Yoshikuni
… of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … His research focus includes engineering of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe and …
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Ian Blaby
… Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three … on HTP DNA design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to …
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An Addiction Crucial to a Fungus’ Reproduction
… in early fungi and discovered genes that are critical for this process. The Impact In the absence of the … the parasite first needs to secure its own transmission before working with the host. Using the mutualistic … (Rm) and Burkholderia endobacteria, a collaborative effort led by researchers at Cornell University and scientists …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used …
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Nikos Kyrpides
… Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … led the development of the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. … 39:499-509. Harrington et al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 …
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