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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Publication Policy
… The purpose of this policy is to establish communication norms around … their work, while also adhering to the authorship policies of the journal in which the research is published. The JGI … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … the technologies and enabling state-of-the-art sample processing and sequencing capabilities. The Genomic … DAP-seq (multiDAP-seq) method allowing high-throughput processing of samples in 96-well plates on automated liquid …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the data are publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and on …
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … experiments and data analysis. Starting with isolating and identifying fungi in the environment, students can prepare … and Sample Metadata (Module 2), Sample Collection and Processing (Module 3), Data Analysis in KBase (Module 4), …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … can use to design more efficient microbial factories. Identifying specific genes, regulatory elements and … to accelerate development of bio-based manufacturing processes for producing industrial chemicals, specialty …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … Preliminary observations regarding the contributions of algae and viruses to the ecosystem were noted, but require …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of … Symposium will take place at The Marjorie Barrick Museum of Art at the University of Nevada, Las Vegas. The poster …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … multiple copies of some genes. This polyploidization process is ongoing and many plants, including agricultural … Aberystwyth University (UK); HudsonAlpha Institute for Biotechnology; University of Massachusetts Amherst; and, …
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