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Silver age of GOLD introduces new features
… OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … genomic data usage is having the appropriate contextual information, or metadata, stored with them. GOLD provides … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Toward More Efficient Artificial Photosynthesis
… Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation … A team led by researchers at the Max Planck Institute (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics chloroplast function within a cell-sized …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the … of data gave the team unprecedented resolution to study the network of genes that contribute to the metabolisms that …
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A User-Centered Approach to Accessing JGI Data
… the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying … portion of the Arkansas River that’s just a little west of Fort Collins, near a city called Leadville. ED:   And, uh, …
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Georg Rath
… the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of … science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, Vienna) and the High Field MRI …
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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … (SMC) has launched as an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… DOE Joint Genome Institute (JGI), and the Energy Sciences Network (ESnet) have been recognized for outstanding achievements in science, technology, and … Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s … one is marker gene-based, and the second is a neural network approach. The tool was employed to build version 4 …
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Streamlining Regulon Identification in Bacteria
… regulation is critical to ensuring genes vital for growth and survival across various environments are … RIViT-seq expand the known transcriptional regulatory network in bacteria, enabling the discovery of regulatory … a deeper understanding of these transcriptional regulatory networks. …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… and Sheree Yao. ] ] The JGI welcomed 14 scientists selected for our 2026 Community Science Program Large Scale call. … with optimized lignin, engineering heat-resilient algae for industrial applications, and developing RNA barcoding … a project led by the National Ecological Observatory Network (NEON) in collaboration with the National Microbiome …
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